SPANG API

We developed a SPANG library API to search for the set of SPARQL queries. SPANG library is accessible through SPANG Web API. The following command returns the list of libraries.

curl https://spang-portal.dbcls.jp/api/library

The results is shown below as JSON format.

[
  {
    "name": "disgenet",
    "title": "DisGeNET",
    "description": "DisGeNET",
    "endpoint": "http://rdf.disgenet.org/sparql/",
    "schema": "http://www.disgenet.org/web/DisGeNET/menu/rdf#schema",
    "uri": "http://localhost:7070/api/library/disgenet",
    "count": 14
  },
  {
    "name": "wikipathways",
    "title": "WikiPathways",
    "description": "WikiPathways",
    "endpoint": "http://sparql.wikipathways.org/",
    "schema": null,
    "uri": "http://localhost:7070/api/library/wikipathways",
    "count": 6
  },
  ...
]

The following command returns the list of query in a library.

curl https://spang-portal.dbcls.jp/api/library/disgenet

The results is shown in below as JSON format.

{
  "disgenet": [
    {
      "name": "disease_gene",
      "title": "Get UniProt IDs for a specific disease, e.g. C0751955 (\"Brain Infarction\")",
      "uri": "http://localhost:7070/api/disgenet/disease_gene",
      "endpoint": "http://rdf.disgenet.org/sparql/",
      "param": [
        {
          "name": "arg1",
          "default": "C0751955"
        }
      ]
    },
    {
      "name": "disease_uniprot",
      "title": "Get UniProt IDs for a specific disease, e.g. C0751955 (\"Brain Infarction\")",
      "uri": "http://localhost:7070/api/disgenet/disease_uniprot",
      "endpoint": "http://rdf.disgenet.org/sparql/",
      "param": [
        {
          "name": "arg1",
          "default": "C0751955"
        }
      ]
    },
    {
      "name": "gda_alzheimer",
      "title": "Alzheimer's disease-related genes with curated evidences",
      "uri": "http://localhost:7070/api/disgenet/gda_alzheimer",
      "endpoint": "http://rdf.disgenet.org/sparql/",
      "param": [

      ]
    },
    {
      "name": "gda_evidence",
      "title": "Get specific gda, e.g. NCBI gene ID 4204 and C0035372(\"Rett Syndrome\")",
      "uri": "http://localhost:7070/api/disgenet/gda_evidence",
      "endpoint": "http://rdf.disgenet.org/sparql/",
      "param": [

      ]
    },
    ...
  ]
}

The following command searches for queries with keywords.

curl https://spang-portal.dbcls.jp/api/search?keyword=gene

Using SPANG API, users can execute SPARQL query over the Web, with the given parameters.

The following command returns the result of the query, with the given parameter.

curl https://spang-portal.dbcls.jp/api/library/disgenet/gene\_disease.rq?arg1=678